10. Release notes¶
10.1. Developer version¶
10.2. Version 1.1.22¶
correction of package: __init.py__ was missing in newly created module ascidian/src/registration
10.3. Version 1.1.21¶
correct incompatibilities with newer versions of numpy
code cleaning
documentation update
Enrich diagnosis and adjust verboseness
Allows co-registration of time series, ie pre-computation of transformations
Add figure to assess (single) time point naming
Improve symmetry axis by name by introducing laterality property
10.4. Version 1.1.20¶
bin/ascidian_embryo.py: correct bad choice of parameters when initializing embryo
10.5. Version 1.1.19¶
add some tests
prevent time interval to be set as a string when reading arguments through a command line and check the time interval type when computing cell lifetime
10.6. Version 1.1.18¶
correct bug in naming_propagation/naming_propagation.py
10.7. Version 1.1.17¶
update documentation
update morphonet related property names issued from naming propagation - naming_agreement: - naming_score: - naming_unequal_division_flag: - renaming_flag:
10.8. Version 1.1.16¶
update documentation
correct inconsistencies due to the joint use of property dictionary and embryo class in name propagation
better initialization of Embryo class.
correct unequal division extraction in division atalases. It is no more a dictionary indexed by delay from division, which was not consistent with division extraction, and incorrect for its use in name propagation.
change verbose status in some interfaces and/or functions
10.9. Version 1.1.15¶
fix bug in Embryo.init()
10.10. Version 1.1.14¶
Update fates (after switching names in reference property files)
b9.33 = “Tail-tip cells”
b9.34 = “Secondary lineage, tail muscle”;
b8.24 = “Medio-Lateral Tail Epidermis”
b9.45 = “Lateral Tail Epidermis”
b9.46 = “Medio-Lateral Tail Epidermis”
correct tissue map writing; add generation group for morphonet
clean-up in property key names. Remove some old stuff.
separate embryo/cell related keys for property management
10.11. Version 1.1.13¶
Allows to temporally align with fate through ‘ascidian_embryo’
Update fate wrt switch b9.33 / b9.34
10.12. Version 1.1.12¶
Time alignment error correction
10.13. Version 1.1.11¶
Update ascidian fates
Use name_choice_score as property to assess naming propagation
10.14. Version 1.1.10¶
Fix the computation of time post fertilization (tpf) and time interval (dt). Add documentation.
10.15. Version 1.1.9¶
Add propagation of vegetal/animal, anterior/posterior, and left/right morphonet properties
10.16. Version 1.1.8¶
correction of left/right property generation
10.17. Version 1.1.7¶
correction of animal/vegetal property generation
10.18. Version 1.1.6¶
update configuration files
10.19. Version 1.1.5¶
enrich morphonet outputs
enrich property file with embryo related properties
10.20. Version 1.1.4¶
add short names generation
update fates
enrich morphonet outputs: groups anterior/posterior, animal/vegetal, left/right
10.21. Version 1.1.3¶
documentation
astec_embryo was not updated properly wrt astec package
10.22. Version 1.1.2¶
update tissue fates (add ‘Tail-tip Cells’ fate)
enrich morphonet file writing: enables more properties to be written out
10.23. Version 1.1.1¶
add __init__.py in src/ascidian/components
10.24. Version 1.1.0¶
division variation assessment
morphonet name map
embryo naming with graph matching
optimization of winged contact cell signature
optimization of symmetry axis computation with winged contacts
10.25. Version 1.0.0¶
major refactoring
introduce the naming of a timepoint with linear assignment from cell similarity
correct wrong behavior in name initialization when the requested cell count is not found
correct bug on cell fate computation
enrich diagnosis on cell names
10.26. Version 0.3.1¶
vector distribution, correct handling of file suffix in figure()
10.27. Version 0.3.0¶
documentation updating
refactoring symmetry related code; vector distribution dedicated code
pursued code splitting into astec/ascidian repositories
documentation splitting into astec/ascidian