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Welcome to astec’s tutorial!¶

ASTEC, for Adaptive Segmentation and Tracking of Embryonic Cells, was first developed during L. Guignard PhD thesis [Gui15].

Its development has been pursued, and it was used to process 3D+t movies acquired by the MuViSPIM light-sheet microscope [GFL+20].

Contents

  • 1. Astec Installation
    • 1.1. User installation (without git)
    • 1.2. User installation (with git)
    • 1.3. Developer installation (with git)
  • 2. Astec Tutorial
    • 2.1. Tutorial installation
    • 2.2. Tutorial data
      • 2.2.1. Fusion
      • 2.2.2. Sequence intra-registration (or drift/motion compensation) [1]
      • 2.2.3. Segmentation of the first time point
      • 2.2.4. Correction of the first time point segmentation
      • 2.2.5. Segmentation propagation
      • 2.2.6. Sequence intra-registration (or drift/motion compensation) [2]
      • 2.2.7. Sequence properties computation [1]
      • 2.2.8. Segmentation post-correction
      • 2.2.9. Sequence intra-registration (or drift compensation) [3]
      • 2.2.10. Sequence properties computation [2]
  • 3. Publications & bibliography

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