1. Release notes

1.1. Developer version

1.2. Version 2.1.2

  • improve name comparison behavior

  • correct bad behavior of astec_astec when restarting the computation

1.3. Version 2.1.1

  • documentation updating

  • correct bad behavior of ReconstructionParameters.is_normalization_equal() when intensity_transformation is None

1.4. Version 2.1.0

  • documentation updating

  • pursued code splitting into astec/ascidian repositories

  • documentation splitting into astec/ascidian

1.5. Version 2.0.0

  • moved ascidian algorithms/binaries to a dedicated git repository

  • replaced pkg_resources by importlib.metadata

  • added test infrastructure

  • refactor setup.py (adding setup.cfg)

1.6. Version 1.7.2

  • Review of conda env files (*.yaml) and build

  • Use builtin which command instead of external process to launch astec binaries

  • Removed obsolete python-3.7 builds, added python-3.10 and python-3.11

1.7. Version 1.7.1

  • Write embryo as a graph

  • Computation of symmetric cells

  • Allows to extract any XZ-section(s) at the fusion stage.

1.8. Version 1.7.0

  • Fusion of one single time point: allows longer suffixes than recognized image extensions.

  • Pre-processed images (see Image preprocessing) are no more stored into .../SEG/SEG_XXX/RECONSTRUCTION/ but in their own directories .../REC-MEMBRANE/REC_XXX/ and/or .../REC-SEED/REC_XXX/ and/or .../REC-MORPHOSNAKE/REC_XXX/. They can be transformed by the motion compensation stage (see astec_intraregistration).

  • User-provided outer contour images (to be stored in .../CONTOUR_/CONTOUR_XXX/) can be used in image pre-processing (see Image preprocessing)

  • Properties computation (see astec_embryoproperties) computes cell lineage when it is not available.

1.9. Version 1.6.2

Release notes not available