1. Release notes¶
1.1. Developer version¶
1.2. Version 2.1.2¶
improve name comparison behavior
correct bad behavior of astec_astec when restarting the computation
1.3. Version 2.1.1¶
documentation updating
correct bad behavior of ReconstructionParameters.is_normalization_equal() when intensity_transformation is None
1.4. Version 2.1.0¶
documentation updating
pursued code splitting into astec/ascidian repositories
documentation splitting into astec/ascidian
1.5. Version 2.0.0¶
moved ascidian algorithms/binaries to a dedicated git repository
replaced pkg_resources by importlib.metadata
added test infrastructure
refactor setup.py (adding setup.cfg)
1.6. Version 1.7.2¶
Review of conda env files (*.yaml) and build
Use builtin which command instead of external process to launch astec binaries
Removed obsolete python-3.7 builds, added python-3.10 and python-3.11
1.7. Version 1.7.1¶
Write embryo as a graph
Computation of symmetric cells
Allows to extract any XZ-section(s) at the fusion stage.
1.8. Version 1.7.0¶
Fusion of one single time point: allows longer suffixes than recognized image extensions.
Pre-processed images (see Image preprocessing) are no more stored into
.../SEG/SEG_XXX/RECONSTRUCTION/
but in their own directories.../REC-MEMBRANE/REC_XXX/
and/or.../REC-SEED/REC_XXX/
and/or.../REC-MORPHOSNAKE/REC_XXX/
. They can be transformed by the motion compensation stage (see astec_intraregistration).User-provided outer contour images (to be stored in
.../CONTOUR_/CONTOUR_XXX/
) can be used in image pre-processing (see Image preprocessing)Properties computation (see astec_embryoproperties) computes cell lineage when it is not available.
1.9. Version 1.6.2¶
Release notes not available