19. Release notes¶
19.1. Developer version¶
19.2. Version 2.2.5¶
I/O for morphonet: cell map was not written properly.
19.3. Version 2.2.4¶
Post-correction: property name uniformisation was not propagated properly.
19.4. Version 2.2.3¶
Enrich drift computation: score upper threshold; early stop at first iteration
Correct I/O of tissue map fate
Enrich documentation
19.5. Version 2.2.2¶
Correction of extrapolation of weight image for drift-based fusion.
19.6. Version 2.2.1¶
add a missing __init__.py
19.7. Version 2.2.0¶
introduce drift estimation within a fused time series, and between corresponding images of two fused time series
fusion: introduce drift-compensated fusion
fusion: generalize transformation saving for both drift-compensated fusion and hierarchical fusion
19.8. Version 2.1.11¶
I/O: correct conversion procedures (they did not work properly)
I/O: correct tulip file writing (was not compatible with new properties definition)
astec_embryoproperties: do not write tulip file anymore
19.9. Version 2.1.10¶
I/O: conversion procedures, to avoir writing numpy types in output files for backward compatibility with older versions of numpy/python. It seems that some “equivalence” with raw python type are now lost (see NEP 40 — Legacy datatype implementation in NumPy and related NEPs)
fusion: transformations are saved in a separate directory
fusion: corrections to fuse with a subset of views
19.10. Version 2.1.9¶
manualcorrection: corrects the correction files; allows for restarting
enrich morphonet file writing: enables more properties to be written out
19.11. Version 2.1.8¶
manual correction: correct potential overflow problem (see NEP 50 — Promotion rules for Python scalars)
python 3.9: (np.uint16) * (int) -> (np.int64)
python 3.11: (np.uint16) * (int) -> (np.uint16)
This may cause similar troubles in the future.
19.12. Version 2.1.7¶
manual correction: correct the propagation of newly created divisions
19.13. Version 2.1.6¶
correct inrimage IO
19.14. Version 2.1.5¶
allows to change for the images kept for fusion, while keeping the same point of view fusion (ie from the same camera)
19.15. Version 2.1.4¶
correct bad behavior for direct fusion when the left camera image from stack #0 is not present
19.16. Version 2.1.3¶
allows to have new labels when dividing cell in astec_manualcorrection, and mother cell label is not reused for a daughter cell
update documentation
19.17. Version 2.1.2¶
improve name comparison behavior
correct bad behavior of astec_astec when restarting the computation
19.18. Version 2.1.1¶
documentation updating
correct bad behavior of ReconstructionParameters.is_normalization_equal() when intensity_transformation is None
19.19. Version 2.1.0¶
documentation updating
pursued code splitting into astec/ascidian repositories
documentation splitting into astec/ascidian
19.20. Version 2.0.0¶
moved ascidian algorithms/binaries to a dedicated git repository
replaced pkg_resources by importlib.metadata
added test infrastructure
refactor setup.py (adding setup.cfg)
19.21. Version 1.7.2¶
Review of conda env files (*.yaml) and build
Use builtin which command instead of external process to launch astec binaries
Removed obsolete python-3.7 builds, added python-3.10 and python-3.11
19.22. Version 1.7.1¶
Write embryo as a graph
Computation of symmetric cells
Allows to extract any XZ-section(s) at the fusion stage.
19.23. Version 1.7.0¶
Fusion of one single time point: allows longer suffixes than recognized image extensions.
Pre-processed images (see Image preprocessing) are no more stored into
.../SEG/SEG_XXX/RECONSTRUCTION/but in their own directories.../REC-MEMBRANE/REC_XXX/and/or.../REC-SEED/REC_XXX/and/or.../REC-MORPHOSNAKE/REC_XXX/. They can be transformed by the motion compensation stage (see astec_intraregistration).User-provided outer contour images (to be stored in
.../CONTOUR_/CONTOUR_XXX/) can be used in image pre-processing (see Image preprocessing)Properties computation (see astec_embryoproperties) computes cell lineage when it is not available.
19.24. Version 1.6.2¶
Release notes not available