1. Release notes¶
1.1. Developer version¶
1.2. Version 2.1.9¶
manualcorrection: corrects the correction files; allows for restarting
enrich morphonet file writing: enables more properties to be written out
1.3. Version 2.1.8¶
manual correction: correct potential overflow problem.
python 3.9: (np.uint16) * (int) -> (np.int64)
python 3.11: (np.uint16) * (int) -> (np.uint16)
This may cause similar troubles in the future.
1.4. Version 2.1.7¶
manual correction: correct the propagation of newly created divisions
1.5. Version 2.1.6¶
correct inrimage IO
1.6. Version 2.1.5¶
allows to change for the images kept for fusion, while keeping the same point of view fusion (ie from the same camera)
1.7. Version 2.1.4¶
correct bad behavior for direct fusion when the left camera image from stack #0 is not present
1.8. Version 2.1.3¶
allows to have new labels when dividing cell in astec_manualcorrection, and mother cell label is not reused for a daughter cell
update documentation
1.9. Version 2.1.2¶
improve name comparison behavior
correct bad behavior of astec_astec when restarting the computation
1.10. Version 2.1.1¶
documentation updating
correct bad behavior of ReconstructionParameters.is_normalization_equal() when intensity_transformation is None
1.11. Version 2.1.0¶
documentation updating
pursued code splitting into astec/ascidian repositories
documentation splitting into astec/ascidian
1.12. Version 2.0.0¶
moved ascidian algorithms/binaries to a dedicated git repository
replaced pkg_resources by importlib.metadata
added test infrastructure
refactor setup.py (adding setup.cfg)
1.13. Version 1.7.2¶
Review of conda env files (*.yaml) and build
Use builtin which command instead of external process to launch astec binaries
Removed obsolete python-3.7 builds, added python-3.10 and python-3.11
1.14. Version 1.7.1¶
Write embryo as a graph
Computation of symmetric cells
Allows to extract any XZ-section(s) at the fusion stage.
1.15. Version 1.7.0¶
Fusion of one single time point: allows longer suffixes than recognized image extensions.
Pre-processed images (see Image preprocessing) are no more stored into
.../SEG/SEG_XXX/RECONSTRUCTION/
but in their own directories.../REC-MEMBRANE/REC_XXX/
and/or.../REC-SEED/REC_XXX/
and/or.../REC-MORPHOSNAKE/REC_XXX/
. They can be transformed by the motion compensation stage (see astec_intraregistration).User-provided outer contour images (to be stored in
.../CONTOUR_/CONTOUR_XXX/
) can be used in image pre-processing (see Image preprocessing)Properties computation (see astec_embryoproperties) computes cell lineage when it is not available.
1.16. Version 1.6.2¶
Release notes not available